Detalhe da pesquisa
1.
The emergence and ongoing convergent evolution of the SARS-CoV-2 N501Y lineages.
Cell;
184(20): 5189-5200.e7, 2021 09 30.
Artigo
em Inglês
| MEDLINE
| ID: mdl-34537136
2.
Detection of a SARS-CoV-2 variant of concern in South Africa.
Nature;
592(7854): 438-443, 2021 04.
Artigo
em Inglês
| MEDLINE
| ID: mdl-33690265
3.
Natural selection in the evolution of SARS-CoV-2 in bats created a generalist virus and highly capable human pathogen.
PLoS Biol;
19(3): e3001115, 2021 03.
Artigo
em Inglês
| MEDLINE
| ID: mdl-33711012
4.
Selection Analysis Identifies Clusters of Unusual Mutational Changes in Omicron Lineage BA.1 That Likely Impact Spike Function.
Mol Biol Evol;
39(4)2022 04 11.
Artigo
em Inglês
| MEDLINE
| ID: mdl-35325204
5.
TopHap: rapid inference of key phylogenetic structures from common haplotypes in large genome collections with limited diversity.
Bioinformatics;
38(10): 2719-2726, 2022 05 13.
Artigo
em Inglês
| MEDLINE
| ID: mdl-35561179
6.
Contrast-FEL-A Test for Differences in Selective Pressures at Individual Sites among Clades and Sets of Branches.
Mol Biol Evol;
38(3): 1184-1198, 2021 03 09.
Artigo
em Inglês
| MEDLINE
| ID: mdl-33064823
7.
An Evolutionary Portrait of the Progenitor SARS-CoV-2 and Its Dominant Offshoots in COVID-19 Pandemic.
Mol Biol Evol;
38(8): 3046-3059, 2021 07 29.
Artigo
em Inglês
| MEDLINE
| ID: mdl-33942847
8.
No more business as usual: Agile and effective responses to emerging pathogen threats require open data and open analytics.
PLoS Pathog;
16(8): e1008643, 2020 08.
Artigo
em Inglês
| MEDLINE
| ID: mdl-32790776
9.
HyPhy 2.5-A Customizable Platform for Evolutionary Hypothesis Testing Using Phylogenies.
Mol Biol Evol;
37(1): 295-299, 2020 Jan 01.
Artigo
em Inglês
| MEDLINE
| ID: mdl-31504749
10.
HIV-TRACE (TRAnsmission Cluster Engine): a Tool for Large Scale Molecular Epidemiology of HIV-1 and Other Rapidly Evolving Pathogens.
Mol Biol Evol;
35(7): 1812-1819, 2018 07 01.
Artigo
em Inglês
| MEDLINE
| ID: mdl-29401317
11.
Datamonkey 2.0: A Modern Web Application for Characterizing Selective and Other Evolutionary Processes.
Mol Biol Evol;
35(3): 773-777, 2018 Mar 01.
Artigo
em Inglês
| MEDLINE
| ID: mdl-29301006
12.
Full-Length Envelope Analyzer (FLEA): A tool for longitudinal analysis of viral amplicons.
PLoS Comput Biol;
14(12): e1006498, 2018 12.
Artigo
em Inglês
| MEDLINE
| ID: mdl-30543621
13.
phylotree.js - a JavaScript library for application development and interactive data visualization in phylogenetics.
BMC Bioinformatics;
19(1): 276, 2018 07 25.
Artigo
em Inglês
| MEDLINE
| ID: mdl-30045713
14.
Less is more: an adaptive branch-site random effects model for efficient detection of episodic diversifying selection.
Mol Biol Evol;
32(5): 1342-53, 2015 May.
Artigo
em Inglês
| MEDLINE
| ID: mdl-25697341
15.
Gene-wide identification of episodic selection.
Mol Biol Evol;
32(5): 1365-71, 2015 May.
Artigo
em Inglês
| MEDLINE
| ID: mdl-25701167
16.
IDEPI: rapid prediction of HIV-1 antibody epitopes and other phenotypic features from sequence data using a flexible machine learning platform.
PLoS Comput Biol;
10(9): e1003842, 2014 Sep.
Artigo
em Inglês
| MEDLINE
| ID: mdl-25254639
17.
AUTO-TUNE: SELECTING THE DISTANCE THRESHOLD FOR INFERRING HIV TRANSMISSION CLUSTERS.
bioRxiv;
2024 Mar 14.
Artigo
em Inglês
| MEDLINE
| ID: mdl-38559140
18.
Predicting the mutational drivers of future SARS-CoV-2 variants of concern.
Sci Transl Med;
14(633): eabk3445, 2022 Feb 23.
Artigo
em Inglês
| MEDLINE
| ID: mdl-35014856
19.
Selection analysis identifies unusual clustered mutational changes in Omicron lineage BA.1 that likely impact Spike function.
bioRxiv;
2022 Jan 18.
Artigo
em Inglês
| MEDLINE
| ID: mdl-35075456
20.
Extra base hits: Widespread empirical support for instantaneous multiple-nucleotide changes.
PLoS One;
16(3): e0248337, 2021.
Artigo
em Inglês
| MEDLINE
| ID: mdl-33711070